Oh dear.
Discovered a massive bug when prompted to set folder paths which rendered the console unusable. This has been fixed here with the new pastebin link. You are no longer prompted to enter the paths at the start, but you can set them later on.
Here's the new script file and updated pastebin link:
http://pastebin.graalcenter.org/read.php?id=37698082233
If a moderator could update both of these things in the original post, it would be greatly appreciated!